An evolutionary preserved intergenic spacer in gadiform mitogenomes generates a long noncoding RNA
Identifieur interne : 000096 ( Main/Exploration ); précédent : 000095; suivant : 000097An evolutionary preserved intergenic spacer in gadiform mitogenomes generates a long noncoding RNA
Auteurs : Tor Erik J Rgensen [Norvège] ; Ingrid Bakke [Norvège] ; Anita Ursvik [Norvège] ; Morten Andreassen [Norvège] ; Truls Moum [Norvège] ; Steinar D. Johansen [Norvège]Source :
- BMC Evolutionary Biology [ 1471-2148 ] ; 2014.
Abstract
Vertebrate mitogenomes are economically organized and usually lack intergenic sequences other than the control region. Intergenic spacers located between the tRNAThr and tRNAPro genes (“T-P spacers”) have been observed in several taxa, including gadiform species, but information about their biological roles and putative functions is still lacking.
Sequence characterization of the complete European hake
The T-P spacer is inferred to be evolutionary preserved in gadiform mitogenomes due to gain of function through a long noncoding RNA. We suggest that the T-P spacer adds stability to the H-strand specific long noncoding RNA by forming stable hairpin structures and additional protein binding sites.
Url:
DOI: 10.1186/s12862-014-0182-3
PubMed: 25145347
PubMed Central: 4236577
Affiliations:
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Le document en format XML
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Vertebrate mitogenomes are economically organized and usually lack intergenic sequences other than the control region. Intergenic spacers located between the tRNA<sup>Thr</sup>
and tRNA<sup>Pro</sup>
genes (“T-P spacers”) have been observed in several taxa, including gadiform species, but information about their biological roles and putative functions is still lacking.</p>
</sec>
<sec><title>Results</title>
<p>Sequence characterization of the complete European hake <italic>Merluccius merluccius</italic>
mitogenome identified a complex T-P spacer ranging in size from 223–532 bp. Further analyses of 32 gadiform species, representing 8 families and 28 genera, revealed the evolutionary preserved presence of T-P spacers across all taxa. Molecular complexity of the T-P spacers was found to be coherent with the phylogenetic relationships, supporting a common ancestral origin and gain of function during codfish evolution. Intraspecific variation of T-P spacer sequences was assessed in 225 Atlantic cod specimens and revealed 26 haplotypes. Pyrosequencing data representing the mito-transcriptome poly (A) fraction in Atlantic cod identified an abundant H-strand specific long noncoding RNA of about 375 nt. The T-P spacer corresponded to the 5’ part of this transcript, which terminated within the control region in a tail-to-tail configuration with the L-strand specific transcript (the 7S RNA).</p>
</sec>
<sec><title>Conclusions</title>
<p>The T-P spacer is inferred to be evolutionary preserved in gadiform mitogenomes due to gain of function through a long noncoding RNA. We suggest that the T-P spacer adds stability to the H-strand specific long noncoding RNA by forming stable hairpin structures and additional protein binding sites.</p>
</sec>
</div>
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